Inken Wohlers, PhD Student Algorithmic Computational Biology Life Sciences Group Centrum voor Wiskunde en Informatica ( CWI ) Science Park 123, 1098 XG P.O. Box 94079, 1090 GB Amsterdam The Netherlands Phone: +31 (0)20 592 4014 Fax: +31 (0)20 592 4199 Publications I. Wohlers, R. Andonov, and G.W. Klau. Algorithm Engineering for Optimal Alignment of Protein Structure Distance Matrices. Optimization Letters. 2011; 5(3):421-433. I. Wohlers, F.S. Domingues, and G.W. Klau. Towards optimal alignment of protein structure distance matrices. Bioinformatics. 2010; 26(18):2273-80. I. Wohlers, L. Petzold, F.S. Domingues, and G.W. Klau. Aligning protein structures using distance matrices and combinatorial optimization. In I. Grosse et al., editor, Proc. of GCB 2009, Lecture Notes in Informatics, 2009. I. Wohlers, H. Stachelscheid, J. Borstlap, K. Zeilinger, and J.C. Gerlach. The Characterization Tool: A knowledge-based stem cell, differentiated cell, and tissue database with a web-based analysis front-end. Stem Cell Res. 2009; 3(2-3): 88-95. (Extended) Abstracts A. Mucherino, I. Wohlers, G.W. Klau, R. Andonov. Sparsifying Distance Matrices for Protein-Protein Structure Alignments. Proceedings of the 10th Cologne-Twente Workshop on Graphs and Combinatorial Optimization (CTW11), 211-214, 2011. Best Poster Award Runner Up, ISCB Student Council Symposium, Stockholm. Corresponding selected abstract: I. Wohlers, L. Petzold, F.S. Domingues, and G.W. Klau. PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation. BMC Bioinformatics 2009, 10(Suppl 13):P2. Bachelor- and Master Thesis I. Wohlers. Alignment of Protein Distance Matrices with Mathematical Programming. M.Sc. thesis at the Free University Berlin, August 2008. I. Wohlers. Direkte Suchmethoden und ihre Anwendung zur Schätzung endokriner Parameter. B.Sc. thesis at the University Lübeck, August 2005. CWI DISCLAIMER